Intro

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Video

descriptive blurbThis guide will describe the process of publishing an example metadata set using SeMPyRO to a FAIR Data Point. The https://health-ri.atlassian.net/wiki/spaces/FSD/pages/827719689/Publishing+metadata+in+FDP+using+SeMPyRO#Video-guide will show the process from beginning to end, while the https://health-ri.atlassian.net/wiki/spaces/FSD/pages/827719689/Publishing+metadata+in+FDP+using+SeMPyRO#Step-by-step-guide will highlight key steps in the process.

Video guide

The video below will run through the process of creating and publising metadata using SeMPyRO. The prerequisites for the environment demonstrated in the video are described in the https://health-ri.atlassian.net/wiki/spaces/FSD/pages/827719689/Publishing+metadata+in+FDP+using+SeMPyRO#Setup below.

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Step-by-step guide

Stepping through the prerequisites and running the notebook to publish metadata.

Setup

This guide assumes a (local) FDP is installed, configured with the v1.0.0 shapes (available at https://github.com/Health-RI/health-ri-metadata/tree/v1.0.0/Formalisation(shacl)/Core/PiecesShape).

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• Clone the SeMPyRO repository

• Navigate to the docs folder

• Use hatch to run the notebook: hatch run docs:jupyter lab

• Navigate to localhost:8888

Executing the notebook

Stepping through the cells in the notebook, some cells will print output (like urls/identifiers of metadata published) or require user input. The cells of note are addressed below.

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