Health-RI wiki v4.0 -> consultatie (open tot 03-12-2024)


Concrete application components (products)

This page contains a number of concrete application components (products) for each abstract application component that can fulfill the application function. The list of concrete applications is not complete and some products may not yet be properly classified

 

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Name

Supplier

Type

Desciption

Andrea

DRE

Secure analysis processing environment

A Trusted Solution for Storing, Processing, and Collaborating on Data 

Atlas

OHDSI

Secure analysis processing environment

ATLAS is a free, publicly available web-based, open-source software application developed by the OHDSI community to support the design and execution of observational analyses to generate real world evidence from patient level observational data.

cBioPortal

Health-RI

Secure analysis processing environment for genomics

Explore, visualize, analyze, and share multidimensional genomics data sets

Galaxy

 

Secure analysis processing environment for biobank data

Galaxy is an open source, web-based platform for data intensive biomedical research.

Image Analysis Platform

Health-RI / BBMRI

Secure analysis processing environment for Images

 

Surf Compute Services

SURF

Secure analysis processing environment

 

Molgenis

Molgenis

Secure analysis processing environment for genomics

Molgenis helps to find, capture, exchange, manage and analyse and exploit the large amounts of data

Molgenis Armadillo

Molgenis

Secure analysis processing environment for genomics

MOLGENIS Armadillo allows you to analyse data uploaded in the Armadillo in a federated way. This means that you send the analysis to the Armadillo and results come back from the Armadillo to the researcher.

Omero

 

Secure analysis processing environment for non-DICOM images, especially light microscopy

 

OpenSpecimen

 

Secure analysis processing environment for biobank data

 

XNAT

Health-RI

Secure analysis processing environment for images

Extensible Imaging Archive Toolkit. Archiving, viewing and analysing clinical imaging data.

ICRF generator

Health-RI

Code repository

 

Registry in a Box (RIB)

Health-RI

Code en cookbook repository

 

Podium

Health-RI / BBMRI

Data request tool

A portal to request samples, images and data

REMS

 

Data request tool

 

Opal

Health-RI / BBMRI

Data store

 

Beacon

Open

Discovery tool for genomics

 

Beacon network

Open

Discovery platform for genomics

Federated Network

Cafe variome

 

Catalog

 

Catalogue service

Health-RI / Molgenis

Catalog

Built on Molgenis

Covid portal

HEALTH-RI

Catalog

 

Mica

HEALTH-RI

Catalog

zie ook https://www.obiba.org/pages/products/mica/

SURF data repository

SURF

Catalog

vooral astronomische data

National health data catalogus

HEALTH-RI

Catalogus

See also National health data catalogue

FAIR data point

 

Catalogus, data onboarding

 

Img2Catalog

HEALTH-RI

Metadata extractie

Voor imaging datasets

RIVM Health and Healthcare data

RIVM

Adressing service

Zorggegevens' provides an overview of all health- and healthcare registrations in the Netherlands with the aim to prevent duplication of data collection.

LibreClinica

 

EDC Tool

 

Castor

 

EDC Tool

Electronic data capturing

REDCap

 

EDC Tool

 

MPC

TNO

Federated processing environment

Multi party computation

Vantage6

IKNL

Federated processing environment

 

Google 2FA

Google

Identification services

 

Keycloak

Open

Identification services

an open source identity and access management solution

LS AAI

ELIXIR

Identification services

 

Microsoft 2FA

Microsoft

Identification services

 

SRAM

SURF

Identification services

 

SURF Conext

SURF

Identification services

 

CBS Microdata access

CBS

Secure processing environment

Local processing environment (at CBS)

Surf Persistent Identifiers

SURF

Localisation/adressing

Creates persistent data location identifiers

CEDAR

 

Metadata management environment/store

 

Panama

 

Metadata store

Registration system voor research proposals

eDelivery

 

Platform for data exchange

Standaard voor EIDas

Surf Data archive

SURF

Storage environment

storage environment voor archiving

Surf data storage and management

SURF

Storage environment

 

Surf Research drive

SURF

Storage environment

cloud-based shared-storage environment

Argos

 

Tools

ARGOS is an open extensible service that simplifies the management, validation, monitoring and maintenance and of Data Management Plans. It allows actors (researchers, managers, supervisors etc) to create actionable DMPs that may be freely exchanged among infrastructures for carrying out specific aspects of the Data management process in accordance with the intentions and commitment of Data owners.

LDOT

Health-RI

Tools

Workflow tool voor klinisch onderzoek

Hands Toolbox

Health-RI

Tools

Tools to help make data FAIR

HtsGet

Molgenis

Tools

This data retrieval API bridges from existing genomics bulk secure data transfers to a client/server model

ZorgTTP

ZorgTTP

Encryption service

 

Mitz

VZVZ

Terms of use generic service

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