Examples step 3

Owned by Niek van Ulzen
Last updated: Nov 11, 2024 by Xiaofeng Liao
1 min read

Omics working group

ISA metadata framework

Link: https://isa-specs.readthedocs.io/en/latest/#

Paper: Sansone, SA., Rocca-Serra, P., Field, D. et al. Toward interoperable bioscience data. Nat Genet 44, 121–126 (2012). https://doi.org/10.1038/ng.1054

Genomics

FAIR Genomes: About FAIR genomes

Paper:

van der Velde, K.J., Singh, G., Kaliyaperumal, R. et al. FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research. Sci Data 9, 169 (2022). https://doi.org/10.1038/s41597-022-01265-x

Metabolomics

Database: https://www.ebi.ac.uk/metabolights/

Lipidomics

Database: LIPID MAPS https://www.lipidmaps.org/